Stem-loop mdm-MIR11016

Accession

MI0035676

Description

Malus domestica mdm-MIR11016 precursor miRNA

Sequence

127 reads, 16.0 reads per million, 27 experiments

cggcagacgcugugucuguuggcuuaaaUUUUGGUAUGGAAAAAUUAUGgaugguguguauuugacuagucaaauacacaccaUCCAUAAUUUUUCCAGAUCAAaagucaaguuaacauacacagcuacucuc
....(((.(((((((.(((((((((...(((((((.(((((((((((((((((((((((((((((....))))))))))))))))))))))))))))).)))))))...))))))))).)))))))...))).

Structure

cggc   --c       c         aaa       A                             c 
    aga   gcugugu uguuggcuu   UUUUGGU UGGAAAAAUUAUGgaugguguguauuuga u
    |||   ||||||| |||||||||   ||||||| |||||||||||||||||||||||||||||  
    ucu   cgacaca acaauugaa   aaAACUA ACCUUUUUAAUACCUaccacacauaaacu a
---c   cau       u         cug       G                             g 

Annotation confidence Medium

Genome context

MDC005072.383: 9803-9935 [+]

Mature mdm-miR11016-5p

• Accession: MIMAT0056818
• Description: Malus domestica mdm-miR11016-5p mature miRNA
• Sequence: 29 - UUUUGGUAUGGAAAAAUUAUG - 49
• Evidence: experimental ; unknown

Mature mdm-miR11016-3p

• Accession: MIMAT0043625
• Description: Malus domestica mdm-miR11016-3p mature miRNA
• Sequence: 84 - UCCAUAAUUUUUCCAGAUCAA - 104
• Evidence: experimental ; Illumina [1]

References

1. Identification of apple miRNAs and their potential role in fire blight resistance
   "Kaja E, Szczesniak MW, Jensen PJ, Axtell MJ, McNellis T, Makalowska I"
   Tree Genet Genomes. (2014) 11:812