Stem-loop mdm-MIR11017

Accession

MI0035678

Description

Malus domestica mdm-MIR11017 precursor miRNA

Sequence

aacuaggaagccuuccuugguCUCUAAUCUGCCCAACAACUUcggcaaucugccycauuuguuucucuaguugauccacccuuyuguuuugauuuucwugcyccugagucaagguggaraguagcuuaacaaguguaucauuauucaaaumauuaccugaaguaguuugggcagguuguggargagcuugugugggugcgu
.........((((.((..(.(((((((((((((((((.(((((((((...)))).((((((((...(((.(...((((((........(((((((..........))))))))))))).).)))...)))))))).......................))))).).))))))))))..)))).)).)..).).))))....

Structure

aacuaggaa    u - uu g  -    --          - A     -----------ggcaaucugccy        ucu   g uga      cuuyuguu       ucwu 
         gccu c c  g uC UCUA  AUCUGCCCAA C ACUUc                       cauuuguu   cua u   uccacc        uugauuu    g
         |||| | |  | || ||||  |||||||||| | |||||                       ||||||||   ||| |   ||||||        |||||||     
         uggg g g  c ag aggu  uggacggguu g ugaag                       gugaacaa   gau a   aggugg        aacugag    c
-----ugcg    u u uu g  r    gu          u a     uccauuamuaaacuuauuacuau        uuc   g --r      --------       uccy 

Annotation confidence Not enough data

Genome context

MDC005641.309: 1113-1313 [+]

Mature mdm-miR11017

• Accession: MIMAT0043627
• Description: Malus domestica mdm-miR11017 mature miRNA
• Sequence: 22 - CUCUAAUCUGCCCAACAACUU - 42
• Evidence: experimental ; Illumina [1]

References

1. Identification of apple miRNAs and their potential role in fire blight resistance
   "Kaja E, Szczesniak MW, Jensen PJ, Axtell MJ, McNellis T, Makalowska I"
   Tree Genet Genomes. (2014) 11:812