Stem-loop mdm-MIR11018

Accession

MI0035679

Description

Malus domestica mdm-MIR11018 precursor miRNA

Sequence

1600 reads, 133.0 reads per million, 28 experiments

cuucugugguuCCAACAUCAAAAGUAAAAGGAAcaaaugugauuggaauccucgaaugucauggaauacuauuaguuuaugauuccaagguaacaggcaaagucgauaaaaaagagccucaaauacguaauucucgauaUGAUUUUUCCUUACUAUUCUUCUcuuuuuguuuuggauguugcaga
..((((......(((((((.((((((((((((..........((((((((...((((...((((....))))..))))..))))))))((((..(((.((((((.(((....((((...(......)...))))...))))))))).))))))).......)))))))))))).)))))))))))

Structure

cu    ugguuC       A            Acaaaugugauuggaauccucgaaugucauggaauacuauuaguuuaugauuccaa    ac   c      g   aaaa    ccu aa 
  ucug      CAACAUC AAAGUAAAAGGA                                                        ggua  agg aaaguc aua    agag   c  a
  ||||      ||||||| ||||||||||||                                                        ||||  ||| |||||| |||    ||||   |   
  agac      guuguag uuuuguuuuucU                                                        UCAU  UCC UUUUAG Uau    ucuu   g  u
--    ------       g            -------------------------------------------------CUUCUUA    --   U      -   -agc    aau ca 

Annotation confidence Low

Genome context

MDC005320.543: 4415-4599 [+]

Mature mdm-miR11018-5p

• Accession: MIMAT0043628
• Description: Malus domestica mdm-miR11018-5p mature miRNA
• Sequence: 12 - CCAACAUCAAAAGUAAAAGGAA - 33
• Evidence: experimental ; Illumina [1]

Mature mdm-miR11018-3p

• Accession: MIMAT0056820
• Description: Malus domestica mdm-miR11018-3p mature miRNA
• Sequence: 140 - UGAUUUUUCCUUACUAUUCUUCU - 162
• Evidence: experimental ; unknown

References

1. Identification of apple miRNAs and their potential role in fire blight resistance
   "Kaja E, Szczesniak MW, Jensen PJ, Axtell MJ, McNellis T, Makalowska I"
   Tree Genet Genomes. (2014) 11:812