Stem-loop mdm-MIR11019

Accession

MI0035680

Description

Malus domestica mdm-MIR11019 precursor miRNA

Sequence

uggguauguggaaaaccagaugguugaucauCCAGAUGAUCAUAAUCUCCUGAaagugcuugauucagaaaggaugaaaugggaugguauugucccgacuacaguuucgucauaugaggguggaagaaaauggucgaaguuguacuguuugucaguaaaaguacaguuucggccauuuucuuccacuguccugugacuaaaccguagucgggccaacaccaucccauuuugccuucaucuuuucugaaucaagcacuuucaggagauuaugaucauccggaugaucaaccaucuaguuuucca
........((((((((.((((((((((((((((.((((((((((((((((((((((((((((((((((((((((((((((((((((((.(((.(((((((((.((((.((((((.((.((((((((((((((((((((((((((((.............)))))))))))))))))))))))))))).)).)))))).)))).))))))))).))).))))))))))......)))))))))))))))))))))))))))))))))))))))))))).)))))))))))))))).))))))))

Structure

uggguaug        c                A                                            ------          a   u         a    c      u  g                            guuug 
        uggaaaac agaugguugaucauCC GAUGAUCAUAAUCUCCUGAaagugcuugauucagaaaggaugaa      augggauggu uug cccgacuac guuu gucaua ga gguggaagaaaauggucgaaguuguacu     u
        |||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||      |||||||||| ||| ||||||||| |||| |||||| || ||||||||||||||||||||||||||||     c
        accuuuug ucuaccaacuaguagg cuacuaguauuagaggacuuucacgaacuaagucuuuucuacuu      uacccuacca aac gggcugaug caaa cagugu cu ucaccuucuuuuaccggcuuugacauga     a
--------        a                c                                            ccguuu          c   c         c    u      c  g                            aaaug 

Annotation confidence Not enough data

Genome context

MDC020582.252: 12264-12566 [+]

Mature mdm-miR11019

• Accession: MIMAT0043629
• Description: Malus domestica mdm-miR11019 mature miRNA
• Sequence: 32 - CCAGAUGAUCAUAAUCUCCUGA - 53
• Evidence: experimental ; Illumina [1]

References

1. Identification of apple miRNAs and their potential role in fire blight resistance
   "Kaja E, Szczesniak MW, Jensen PJ, Axtell MJ, McNellis T, Makalowska I"
   Tree Genet Genomes. (2014) 11:812