Stem-loop mdm-MIR11011b

Accession

MI0035681

Description

Malus domestica mdm-MIR11011b precursor miRNA

Sequence

32394 reads, 2012.0 reads per million, 28 experiments

gaauaacaggucucuucucaaagcaauugaagagucaaggacuccuaucacugcauuuucugaaaauaaugcaucuucaacgUGGUGUUUGGAUGGACCUUUUaagauccuacaaaauuuucaaagaaaagaaaauuuugguacuauuuuuacaaggugaaucacucggaaguacaaaaucagaggaaauuuuuugguacuucucauggauuguaagaucuuaaUAAGUUCAUCCAAACACCAUAuugaggaugcauaguuuucagaaaauacaaugauacaagucuuugauucuucucuuggaagcucauugucaucuaugaa
.....((((....((((......(((..(((((((((((((((..(((((.((.(((((((((((((.((((((((((((.(((((((((((((((((...((((((((...((((((((((........)))))))))).((((..........))))((((....((((((((.....((((((....))))))))))))))....))))....))))))))...))))))))))))))))).)))))))))))).))))))))))))).)).)))))..)))))))))))))))..)))))))....))))..........

Structure

-----gaaua    gucu    ucaaag   uu               cc     c  c             a            c                 CUU        cuacaaaauuuucaaagaaaagaaaauuuugguacuauuuuuacaaggug    acuc        aaaau      a 
          acag    cuuc      caa  gaagagucaaggacu  uauca ug auuuucugaaaau augcaucuucaa gUGGUGUUUGGAUGGAC   UUaagauc                                                  aauc    ggaaguac     cagagg a
          ||||    ||||      |||  |||||||||||||||  ||||| || ||||||||||||| |||||||||||| |||||||||||||||||   ||||||||                                                  ||||    ||||||||     ||||||  
          uguu    gaag      guu  cuucuuaguuucuga  auagu ac uaaaagacuuuug uacguaggaguu UACCACAAACCUACUUG   aauucuag                                                  uuag    ucuucaug     guuuuu a
aaguaucuac    acuc    ------   cu               ac     a  a             a            A                 AAU        ----------------------------------------------aaug    guac        -----      u 

Annotation confidence Medium

Genome context

MDC018209.167: 21973-22296 [-]

Mature mdm-miR11011b-5p

• Accession: MIMAT0056822
• Description: Malus domestica mdm-miR11011b-5p mature miRNA
• Sequence: 83 - UGGUGUUUGGAUGGACCUUUU - 103
• Evidence: experimental ; unknown

Mature mdm-miR11011b-3p

• Accession: MIMAT0043630
• Description: Malus domestica mdm-miR11011b-3p mature miRNA
• Sequence: 225 - UAAGUUCAUCCAAACACCAUA - 245
• Evidence: experimental ; Illumina [1]

References

1. Identification of apple miRNAs and their potential role in fire blight resistance
   "Kaja E, Szczesniak MW, Jensen PJ, Axtell MJ, McNellis T, Makalowska I"
   Tree Genet Genomes. (2014) 11:812