Stem-loop seu-MIR11036

Accession

MI0035701

Description

Salicornia europaea seu-MIR11036 precursor miRNA

Sequence

uauguuguguugguguucgauccagguggaaugaggcgguguuccuacuacgauguugauauacgaguaucaauugauugcuagcuauagacuugagggcaagucuuuuugaaggagggaaguauguuaugggaguuuuacuaaggguagucaagaguuaguuuaauuuguuacuagcuuaauaagauuugccuauauauagcucaauuaaagauauguaaugggcaugauaaggaUUUGGAUGAAUAUGAGGAUGAAuua
....((((.((.((((((.(((((((((((((........))))).........((((((((....))))))))((((((((......((((((...((((...((((((......))))))..))))....)))))).......)))))))).((((((((..........)))))))).........((((((((((((.((.......)).))))).)))))))........)))))))))))))).)).))))....

Structure

uaug    g  g      g        -----------------------------------ggaaugaggcgguguuccuacuacgauguugauauacgaguaucaau        -agcuau      -gag    agu      ga 
    uugu uu guguuc auccaggu                                                                                  ugauugcu       agacuu    ggca   cuuuuu  a
    |||| || |||||| ||||||||                                                                                  ||||||||       ||||||    ||||   ||||||   
    AGUA GA UAUAAG UAGGUUUa                                                                                  acugaugg       uuugag    uugu   gaaggg  g
auuA    G  G      -        ggaauaguacggguaauguauagaaauuaacucgauauauauccguuuagaauaauucgaucauuguuuaauuugauugaga        gaaucau      ggua    -au      ag 

Annotation confidence Not enough data

Genome context

Unknown

Mature seu-miR11036

• Accession: MIMAT0043650
• Description: Salicornia europaea seu-miR11036 mature miRNA
• Sequence: 237 - UUUGGAUGAAUAUGAGGAUGAA - 258
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 25848810
   High-throughput deep sequencing reveals that microRNAs play important roles in salt tolerance of euhalophyte Salicornia europaea
   Feng J, Wang J, Fan P, Jia W, Nie L, Jiang P, Chen X, Lv S, Wan L, Chang S, Li S, Li Y
   BMC Plant Biol (2015) 15:63