Stem-loop seu-MIR11040

Accession

MI0035705

Description

Salicornia europaea seu-MIR11040 precursor miRNA

Sequence

acguugugaugaccggcaugacccaauuguugaucacaugcacaauauaucuauuuuguguuuucggauuaauuccuaauuaauucauauaccuugggauguuuugaauuuggaucaucuucauuuacuacuuccguuccaaaaaaaugcAACAAUUGUCAUGACACGGACuccuaugcau
.(((.(.((.(.((((((((((..((((((((.......((((((..........))))))....(((((((((...))))))))).......(((((((((..(((((..(((...)))..)))))..))....))))))).......)))))))))))))).).))).)))).)))...

Structure

--a   u u  u a   - -      cc        aucacaugcacaauauaucuauuuuguguuuucggauuaauuccuaauuaauucauauacc       ----  uu     uu   u 
   cgu g ga g ccg g caugac  aauuguug                                                             uugggau    gu  ugaau  gga  
   ||| | || | ||| | ||||||  ||||||||                                                             |||||||    ||  |||||  ||| c
   gua c cu C GGC C GUACUG  UUAACAAc                                                             aaccuug    ca  auuua  ucu  
uac   u -  - A   A A      --        ------------------------------------------------------guaaaaa       ccuu  uc     cu   a 

Annotation confidence Not enough data

Genome context

Unknown

Mature seu-miR11040

• Accession: MIMAT0043654
• Description: Salicornia europaea seu-miR11040 mature miRNA
• Sequence: 151 - AACAAUUGUCAUGACACGGAC - 171
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 25848810
   High-throughput deep sequencing reveals that microRNAs play important roles in salt tolerance of euhalophyte Salicornia europaea
   Feng J, Wang J, Fan P, Jia W, Nie L, Jiang P, Chen X, Lv S, Wan L, Chang S, Li S, Li Y
   BMC Plant Biol (2015) 15:63