Stem-loop seu-MIR11044

Accession

MI0035709

Description

Salicornia europaea seu-MIR11044 precursor miRNA

Sequence

aauuaugauuUAGUAUUUGUUAGUUAGUGGGUCauguuuucaccuucucuguauuaauuuugugcuuguauugucucuauaaaaacuuccuauuuauuaaauuaauacaauaaaagguuaaaucaucuuuuuccuuuaauaaaacuaucaccgacccagaauuaauuauguaucuaaauuuggauc
......((((((((((..(((((((..(((((((((.(((.(((((...(((((((((((.(((........((..........))........))).)))))))))))....))))).))).)))..........................)))))).)))))))...))).)))))))......

Structure

aauuau       -   -UU       AG      --------------------------   u   c     -cuc           u   cuuguauu  cucu 
      gauuUAG UAU   GUUAGUU  UGGGUC                          aug uuu accuu    uguauuaauuu gug        gu    a
      ||||||| |||   |||||||  ||||||                          ||| ||| |||||    ||||||||||| |||        ||     
      uuaaauc aug   uaauuaa  acccag                          uac aaa uggaa    acauaauuaaa uau        ca    u
cuaggu       u   uau       -g      ccacuaucaaaauaauuuccuuuuuc   u   u     aaua           u   uuauccuu  aaaa 

Annotation confidence Not enough data

Genome context

Unknown

Mature seu-miR11044

• Accession: MIMAT0043658
• Description: Salicornia europaea seu-miR11044 mature miRNA
• Sequence: 11 - UAGUAUUUGUUAGUUAGUGGGUC - 33
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 25848810
   High-throughput deep sequencing reveals that microRNAs play important roles in salt tolerance of euhalophyte Salicornia europaea
   Feng J, Wang J, Fan P, Jia W, Nie L, Jiang P, Chen X, Lv S, Wan L, Chang S, Li S, Li Y
   BMC Plant Biol (2015) 15:63