Stem-loop seu-MIR11048

Accession

MI0035713

Description

Salicornia europaea seu-MIR11048 precursor miRNA

Sequence

guccaccagccgcuuuaguucuucagaguuaucucgaggguccuccucuguaggcgucaccuugaguauggaaugaucugguucagguucaugcaaaacuccugcuucuuuuguuguauuagagguuuuaaaaggugaauucugcugagacucuaaauuuaggccaagaugUGAAACUUGAGGAACAGGCAGgcauauaucc
........(((((((..((((((((.((((.((.((..((.(((.(((.(((((..(((((((..(((((((.(((......)))..))))))).........((((((...........)))))).....)))))))..))))).)))...........)))))....)).)))))))))))))))))).)))........

Structure

guccacca   -    ua        g    a  u  --ag  u   ----------c   u     cg       -----------------------------------ga       -a   uc 
        gcc gcuu  guucuuca aguu uc cg    gg ccu           cuc guagg  ucaccuu                                     guaugga  uga  u
        ||| ||||  |||||||| |||| || ||    || |||           ||| |||||  |||||||                                     |||||||  |||   
        cgG CGGA  CAAGGAGU UCAA AG gu    cc gga           gag cgucu  aguggaa                                     cguacuu  acu  g
ccuauaua   A    --        -    -  U  agaa  -   uuuaaaucuca   u     ua       aauuuuggagauuauguuguuuucuucguccucaaaa       gg   ug 

Annotation confidence Not enough data

Genome context

Unknown

Mature seu-miR11048

• Accession: MIMAT0043662
• Description: Salicornia europaea seu-miR11048 mature miRNA
• Sequence: 172 - UGAAACUUGAGGAACAGGCAG - 192
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 25848810
   High-throughput deep sequencing reveals that microRNAs play important roles in salt tolerance of euhalophyte Salicornia europaea
   Feng J, Wang J, Fan P, Jia W, Nie L, Jiang P, Chen X, Lv S, Wan L, Chang S, Li S, Li Y
   BMC Plant Biol (2015) 15:63