Stem-loop seu-MIR11049

Accession

MI0035714

Description

Salicornia europaea seu-MIR11049 precursor miRNA

Sequence

accaaaaauuUAAGCUGAUAGUUGUGGCCcacgaauauguuauauacucuaucaguuuuagacucucuguuguaccauuuucuuacauauuugucacagugcuuccagugauuuauaagucaauuguuaggcuuauugcuauccaauuaauguaaauuuuacaucauuugguggagauauuagcauugacuaggaugcgggauuggagagauauaucaaucacgcagaacauaugacacauagcuauuguuagcauuacaaugugga
...........((((((((((..(((....((......))....))).))))))))))...........................((((((.((...((((((..(((((..((((..((((..((((.(((.....)))((((..(((((((.(((((..((((....))))..)).))).)))))))...))))(((.(((((...........))))).)))..))))..))))..)))).)))))..))))))))))))))..

Structure

------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------accaaaaauuU          UU   GCCc  ga 
                                                                                                                                                                                                                 AAGCUGAUAG  GUG    ac  a
                                                                                                                                                                                                                 ||||||||||  |||    ||   
                                                                                                                                                                                                                 uuugacuauc  cau    ug  u
agguguaacauuacgauuguuaucgauacacaguauacaagacgcacuaacuauauagagagguuagggcguaggaucaguuacgauuauagaggugguuuacuacauuuuaaauguaauuaaccuaucguuauucggauuguuaacugaauauuuagugaccuucgugacacuguuuauacauucuuuuaccauguugucucucagau          -u   auau  ua 

Annotation confidence Not enough data

Genome context

Unknown

Mature seu-miR11049

• Accession: MIMAT0043663
• Description: Salicornia europaea seu-miR11049 mature miRNA
• Sequence: 11 - UAAGCUGAUAGUUGUGGCC - 29
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 25848810
   High-throughput deep sequencing reveals that microRNAs play important roles in salt tolerance of euhalophyte Salicornia europaea
   Feng J, Wang J, Fan P, Jia W, Nie L, Jiang P, Chen X, Lv S, Wan L, Chang S, Li S, Li Y
   BMC Plant Biol (2015) 15:63