Stem-loop lja-MIR11066

Accession

MI0035735

Description

Lotus japonicus lja-MIR11066 precursor miRNA

Sequence

2032 reads, 253.0 reads per million, 9 experiments

uugaguaugccacguauggaaaUUCAAGAUGCUCUAUGUUUgaAACAUAGGGGAUCUUGAAUUuccaugucuguuguaccuga
....(((((.((..((((((((((((((((.(((((((((...))))))))).))))))))))))))))..)).)))))....

Structure

uuga     c  cg                G         U 
    guaug ca  uauggaaaUUCAAGAU CUCUAUGUU  
    ||||| ||  |||||||||||||||| ||||||||| g
    caugu gu  guaccuUUAAGUUCUA GGGAUACAA  
aguc     u  cu                G         a 

Annotation confidence High

Genome context

Chr1: 55867455-55867537 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from lja-MIR11066

Mature lja-miR11066-5p

• Accession: MIMAT0043698
• Description: Lotus japonicus lja-miR11066-5p mature miRNA
• Sequence: 23 - UUCAAGAUGCUCUAUGUUU - 41
• Evidence: experimental ; Illumina [1]

Mature lja-miR11066-3p

• Accession: MIMAT0043699
• Description: Lotus japonicus lja-miR11066-3p mature miRNA
• Sequence: 44 - AACAUAGGGGAUCUUGAAUU - 63
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 25967282
   micro RNA 172 (miR172) signals epidermal infection and is expressed in cells primed for bacterial invasion in Lotus japonicus roots and nodules
   "Holt DB, Gupta V, Meyer D, Abel NB, Andersen SU, Stougaard J, Markmann K"
   "New Phytol (2015) 208:241-256