Stem-loop lja-MIR7533c

Accession

MI0035736

Description

Lotus japonicus lja-MIR7533c precursor miRNA

Sequence

3756 reads, 449.0 reads per million, 9 experiments

cuuuaaaauuuaaaauggaUGGCUCAGAUUUUGGAUGGAGAGGggauggagagaaguuggauggagaggauccaaauccgaaaaaacggguuuggauucucuccauccauguucccuccauccucucuccauccAAAUCUGAGCCAUUGAUUUUGAAAuuuaaag
(((((((.((((((((.((((((((((((((.(((((((((((((((((((.(((..(((((((((((((((((((((((......)))))))))))))))))))))))..))).))))))))))))))))))))))))))))))))).)))))))).)))))))

Structure

       a        g              U                   a   gu                       aa 
cuuuaaa uuuaaaau gaUGGCUCAGAUUU GGAUGGAGAGGggauggag gaa  uggauggagaggauccaaauccg  a
||||||| |||||||| |||||||||||||| ||||||||||||||||||| |||  |||||||||||||||||||||||   
gaaauuu AAGUUUUA UUACCGAGUCUAAA ccuaccucucuccuaccuc cuu  accuaccucucuuagguuugggc  a
       A        G              -                   c   gu                       aa 

Annotation confidence Low

Genome context

Chr2: 27609674-27609838 [+]

Mature lja-miR7533c-5p

• Accession: MIMAT0043700
• Description: Lotus japonicus lja-miR7533c-5p mature miRNA
• Sequence: 20 - UGGCUCAGAUUUUGGAUGGAGAGG - 43
• Evidence: experimental ; Illumina [1]

Mature lja-miR7533c-3p

• Accession: MIMAT0054609
• Description: Lotus japonicus lja-miR7533c-3p mature miRNA
• Sequence: 135 - AAAUCUGAGCCAUUGAUUUUGAAA - 158
• Evidence: experimental ; unknown

References

1. PubMed ID: 25967282
   micro RNA 172 (miR172) signals epidermal infection and is expressed in cells primed for bacterial invasion in Lotus japonicus roots and nodules
   "Holt DB, Gupta V, Meyer D, Abel NB, Andersen SU, Stougaard J, Markmann K"
   "New Phytol (2015) 208:241-256