Stem-loop lja-MIR11067

Accession

MI0035737

Description

Lotus japonicus lja-MIR11067 precursor miRNA

Sequence

3876 reads, 529.0 reads per million, 9 experiments

gggucagcUCGACGGGUUGGCUAAAUGAGCCGgguuagguugguuaaauuccaguucgaaaagaacuuggguuagugcaacccgacucguugaacucgcggguuagacgggccaaccgcgggucaAGCGAGCCAACCCGUCGGGUUAGAguu
.(.(((((((((((((((((((...(((.(((((((.((((.(((.(((((((((((((..((...(((((((.....)))))))))..))))))).).))))).))).)))))))).))).)))....))))))))))))))))).)).).

Structure

g g  -                 -AAA   G   -    a    g   a     - -       aa  aac       a 
 g uc agcUCGACGGGUUGGCU    UGA CCG gguu gguu guu aauuc c aguucga  ag   uuggguu g
 | || |||||||||||||||||    ||| ||| |||| |||| ||| ||||| | |||||||  ||   ||||||| u
 u AG UUGGGCUGCCCAACCGA    acu ggc ccaa ccgg cag uuggg g ucaaguu  uc   agcccaa g
u g  A                 GCGA   g   g    -    g   a     c c       gc  ---       c 

Annotation confidence Low

Genome context

Chr1: 20061619-20061770 [+]

Mature lja-miR11067-5p

• Accession: MIMAT0043701
• Description: Lotus japonicus lja-miR11067-5p mature miRNA
• Sequence: 9 - UCGACGGGUUGGCUAAAUGAGCCG - 32
• Evidence: experimental ; Illumina [1]

Mature lja-miR11067-3p

• Accession: MIMAT0043702
• Description: Lotus japonicus lja-miR11067-3p mature miRNA
• Sequence: 126 - AGCGAGCCAACCCGUCGGGUUAGA - 149
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 25967282
   micro RNA 172 (miR172) signals epidermal infection and is expressed in cells primed for bacterial invasion in Lotus japonicus roots and nodules
   "Holt DB, Gupta V, Meyer D, Abel NB, Andersen SU, Stougaard J, Markmann K"
   "New Phytol (2015) 208:241-256