Stem-loop lja-MIR11068a

Accession

MI0035738

Description

Lotus japonicus lja-MIR11068a precursor miRNA

Sequence

40806 reads, 3904.0 reads per million, 9 experiments

agcaucucuaaugcAAGGUUCUUAGUUCUUAUUUUggaguuaagaacuaagaaCUAAGAACUUUACCAUUGGAGGUGcu
(((((((((((((.(((((((((((((((((.(((........))).)))))))))))))))))..)))))))))))))

Structure

             -c                 U   gga 
agcaucucuaaug  AAGGUUCUUAGUUCUUA UUU   g
|||||||||||||  ||||||||||||||||| |||    
ucGUGGAGGUUAC  UUUCAAGAAUCaagaau aag   u
             CA                 c   aau 

Annotation confidence Low

Genome context

Chr1: 3237026-3237104 [+]

Mature lja-miR11068a-5p

• Accession: MIMAT0043703
• Description: Lotus japonicus lja-miR11068a-5p mature miRNA
• Sequence: 15 - AAGGUUCUUAGUUCUUAUUUU - 35
• Evidence: experimental ; Illumina [1]

Mature lja-miR11068a-3p

• Accession: MIMAT0043704
• Description: Lotus japonicus lja-miR11068a-3p mature miRNA
• Sequence: 54 - CUAAGAACUUUACCAUUGGAGGUG - 77
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 25967282
   micro RNA 172 (miR172) signals epidermal infection and is expressed in cells primed for bacterial invasion in Lotus japonicus roots and nodules
   "Holt DB, Gupta V, Meyer D, Abel NB, Andersen SU, Stougaard J, Markmann K"
   "New Phytol (2015) 208:241-256