Stem-loop lja-MIR11068b

Accession

MI0035739

Description

Lotus japonicus lja-MIR11068b precursor miRNA

Sequence

5535 reads, 784.0 reads per million, 9 experiments

gcaucuccaaugcaaguuucuuaguucUUAUUUUGGAGUUAAGAACUAAaaaCUAAGAACUUUACCAUUGGAGGUGc
((((((((((((.(((((.(((((((.(((.(((........))).))).))))))))))))...))))))))))))

Structure

            --c     u       c   U   GGA 
gcaucuccaaug   aaguu cuuaguu UUA UUU   G
||||||||||||   ||||| ||||||| ||| |||    
cGUGGAGGUUAC   UUCAA GAAUCaa AAU AAG   U
            CAU     -       a   C   AAU 

Annotation confidence Low

Genome context

Chr2: 36677431-36677507 [+]

Mature lja-miR11068b-5p

• Accession: MIMAT0054610
• Description: Lotus japonicus lja-miR11068b-5p mature miRNA
• Sequence: 28 - UUAUUUUGGAGUUAAGAACUAA - 49
• Evidence: experimental ; unknown

Mature lja-miR11068b-3p

• Accession: MIMAT0043705
• Description: Lotus japonicus lja-miR11068b-3p mature miRNA
• Sequence: 53 - CUAAGAACUUUACCAUUGGAGGUG - 76
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 25967282
   micro RNA 172 (miR172) signals epidermal infection and is expressed in cells primed for bacterial invasion in Lotus japonicus roots and nodules
   "Holt DB, Gupta V, Meyer D, Abel NB, Andersen SU, Stougaard J, Markmann K"
   "New Phytol (2015) 208:241-256