Stem-loop lja-MIR11068c

Accession

MI0035740

Description

Lotus japonicus lja-MIR11068c precursor miRNA

Sequence

24886 reads, 2173.0 reads per million, 9 experiments

agcaucucuaaugcAAGGUUCUUAGUUCUUAUUUUuuaguuaagaaCUAAGAACUUUACCAUUGGAGGUGcu
(((((((((((((.(((((((((((((((((.........)))))))))))))))))..)))))))))))))

Structure

             -c                 UUU 
agcaucucuaaug  AAGGUUCUUAGUUCUUA   U
|||||||||||||  |||||||||||||||||   u
ucGUGGAGGUUAC  UUUCAAGAAUCaagaau   u
             CA                 uga 

Annotation confidence Low

Genome context

Chr5: 4834696-4834767 [+]

Mature lja-miR11068c-5p

• Accession: MIMAT0043706
• Description: Lotus japonicus lja-miR11068c-5p mature miRNA
• Sequence: 15 - AAGGUUCUUAGUUCUUAUUUU - 35
• Evidence: experimental ; Illumina [1]

Mature lja-miR11068c-3p

• Accession: MIMAT0043707
• Description: Lotus japonicus lja-miR11068c-3p mature miRNA
• Sequence: 47 - CUAAGAACUUUACCAUUGGAGGUG - 70
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 25967282
   micro RNA 172 (miR172) signals epidermal infection and is expressed in cells primed for bacterial invasion in Lotus japonicus roots and nodules
   "Holt DB, Gupta V, Meyer D, Abel NB, Andersen SU, Stougaard J, Markmann K"
   "New Phytol (2015) 208:241-256