Stem-loop lja-MIR11069

Accession

MI0035741

Description

Lotus japonicus lja-MIR11069 precursor miRNA

Sequence

12825 reads, 1315.0 reads per million, 9 experiments

uguucggggagacaugggagcccacgggccgaggagcaAGACACCAAGAGAUCUCGACGCCacaucuuaacccaaaaccuuaaggcauuagguuuaugggucacaucucuuauaaaccuaaugccuuaaggUUUUGGGUUAAGAUGUGGcguugauaucucuuggugucuugcuccucggcucaugggcuccccugucucccccaaca
((((.(((((((((.(((((((((.(((((((((((((((((((((((((((.(((((((((((((((((((((((((((((((((((((((((((((((........))))))))))))))))))))))))))))))))))))))))))))))).))))))))))))))))))))))))))).))))))))).))))))))).))))

Structure

    c         u         c                           C                                               uca 
uguu ggggagaca gggagccca gggccgaggagcaAGACACCAAGAGAU UCGACGCCacaucuuaacccaaaaccuuaaggcauuagguuuauggg   c
|||| ||||||||| ||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
acaa ccccucugu cccucgggu cucggcuccucguucugugguucucua aguugcGGUGUAGAAUUGGGUUUUggaauuccguaauccaaauauuc   a
    c         c         a                           u                                               ucu 

Annotation confidence Low

Genome context

Chr1: 38815525-38815732 [+]

Mature lja-miR11069-5p

• Accession: MIMAT0043708
• Description: Lotus japonicus lja-miR11069-5p mature miRNA
• Sequence: 39 - AGACACCAAGAGAUCUCGACGCC - 61
• Evidence: experimental ; Illumina [1]

Mature lja-miR11069-3p

• Accession: MIMAT0054611
• Description: Lotus japonicus lja-miR11069-3p mature miRNA
• Sequence: 132 - UUUUGGGUUAAGAUGUGG - 149
• Evidence: experimental ; unknown

References

1. PubMed ID: 25967282
   micro RNA 172 (miR172) signals epidermal infection and is expressed in cells primed for bacterial invasion in Lotus japonicus roots and nodules
   "Holt DB, Gupta V, Meyer D, Abel NB, Andersen SU, Stougaard J, Markmann K"
   "New Phytol (2015) 208:241-256