Stem-loop lja-MIR11071

Accession

MI0035743

Description

Lotus japonicus lja-MIR11071 precursor miRNA

Sequence

18179 reads, 1259.0 reads per million, 9 experiments

cuuauaucuaacuuaauuaacauguuccuacUUCCCCAUCAGGCUCUGAUACCaagagggguucggaagcagaaggagggggaugagaUGAGGAUUAAGAGAAGUAGGAc
(((((.(((..(((((((..(((..((((.(((((...((..(((((((..((.....))..)))).))).)).)))))))))....)))..)))))))))).)))))..

Structure

--     a   aa       aa   --gu    a     CCA  AG   -    UA  a 
  cuuau ucu  cuuaauu  cau    uccu cUUCC   UC  GCU CUGA  CC a
  ||||| |||  |||||||  |||    |||| |||||   ||  ||| ||||  || g
  GGAUG AGA  GAAUUAG  GUa    aggg ggagg   ag  cga ggcu  gg a
cA     A   --       GA   gagu    -     --a  -a   a    ug  g 

Annotation confidence Low

Genome context

Chr2: 10028574-10028683 [+]

Mature lja-miR11071-5p

• Accession: MIMAT0054612
• Description: Lotus japonicus lja-miR11071-5p mature miRNA
• Sequence: 32 - UUCCCCAUCAGGCUCUGAUACC - 53
• Evidence: experimental ; unknown

Mature lja-miR11071-3p

• Accession: MIMAT0043710
• Description: Lotus japonicus lja-miR11071-3p mature miRNA
• Sequence: 89 - UGAGGAUUAAGAGAAGUAGGA - 109
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 25967282
   micro RNA 172 (miR172) signals epidermal infection and is expressed in cells primed for bacterial invasion in Lotus japonicus roots and nodules
   "Holt DB, Gupta V, Meyer D, Abel NB, Andersen SU, Stougaard J, Markmann K"
   "New Phytol (2015) 208:241-256