Stem-loop lja-MIR11072a

Accession

MI0035744

Description

Lotus japonicus lja-MIR11072a precursor miRNA

Sequence

25250 reads, 2244.0 reads per million, 9 experiments

ggguuaauccucuaaUUGGUCCCUGUGGUUGUGUgaccgucugaaauuagucccucccguaaaaucuaaguccucgcguuugaaaaaguguguguagcagguccucgccggagggacuaauuuccacacacuuuucaaacgugaggacuuaaauuuuacgggagggacuaauuucagacggucACACAACCACAGGGACCAAuuagaggauuauccc
(((.(((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((.((((((((((((((((((((.(((((((.....(((((((....)).)))))......))))))))))))))))))))))))))).))))))))))))))))))))))))))))))))))))))))))))))))))))))))))))).)))

Structure

   u                                                             c                    a       -uagca     -  g 
ggg uaauccucuaaUUGGUCCCUGUGGUUGUGUgaccgucugaaauuagucccucccguaaaau uaaguccucgcguuugaaaa gugugug      ggucc uc c
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||      ||||| ||  
ccc auuaggagauuAACCAGGGACACCAACACAcuggcagacuuuaaucagggagggcauuuua auucaggagugcaaacuuuu cacacac      ucagg ag c
   u                                                             a                    -       cuuuaa     g  g 

Annotation confidence Medium

Genome context

Chr2: 18093711-18093927 [+]

Mature lja-miR11072a-5p

• Accession: MIMAT0054613
• Description: Lotus japonicus lja-miR11072a-5p mature miRNA
• Sequence: 16 - UUGGUCCCUGUGGUUGUGU - 34
• Evidence: experimental ; unknown

Mature lja-miR11072a-3p

• Accession: MIMAT0043711
• Description: Lotus japonicus lja-miR11072a-3p mature miRNA
• Sequence: 184 - ACACAACCACAGGGACCAA - 202
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 25967282
   micro RNA 172 (miR172) signals epidermal infection and is expressed in cells primed for bacterial invasion in Lotus japonicus roots and nodules
   "Holt DB, Gupta V, Meyer D, Abel NB, Andersen SU, Stougaard J, Markmann K"
   "New Phytol (2015) 208:241-256