Stem-loop lja-MIR11073

Accession

MI0035745

Description

Lotus japonicus lja-MIR11073 precursor miRNA

Sequence

11408 reads, 1812.0 reads per million, 9 experiments

ggauucuggguugggUUGGAUGGAUUUGAACUGAAUCcgaaaucugauccgaacuUGGUUGGGUUGUAGUAAAAUCcauccgauuaauccgauuaccc
(((.((.(((((((.((((((((((((..(((((((((((........(((....)))))))))).)))).))))))))))))))))))))).).)).

Structure

-  - u  u       g            GA    -       aaucugau   a 
 gg a uc ggguugg UUGGAUGGAUUU  ACUG AAUCcga        ccg a
 || | || ||||||| ||||||||||||  |||| |||||||        |||  
 cc u ag ccuaauu agccuacCUAAA  UGAU UUGGGUU        GGU c
c  a u  -       -            -A    G       --------   u 

Annotation confidence Low

Genome context

Chr3: 28537743-28537840 [+]

Mature lja-miR11073-5p

• Accession: MIMAT0043712
• Description: Lotus japonicus lja-miR11073-5p mature miRNA
• Sequence: 16 - UUGGAUGGAUUUGAACUGAAUC - 37
• Evidence: experimental ; Illumina [1]

Mature lja-miR11073-3p

• Accession: MIMAT0054614
• Description: Lotus japonicus lja-miR11073-3p mature miRNA
• Sequence: 56 - UGGUUGGGUUGUAGUAAAAUC - 76
• Evidence: experimental ; unknown

References

1. PubMed ID: 25967282
   micro RNA 172 (miR172) signals epidermal infection and is expressed in cells primed for bacterial invasion in Lotus japonicus roots and nodules
   "Holt DB, Gupta V, Meyer D, Abel NB, Andersen SU, Stougaard J, Markmann K"
   "New Phytol (2015) 208:241-256