Stem-loop lja-MIR11075a

Accession

MI0035747

Description

Lotus japonicus lja-MIR11075a precursor miRNA

Sequence

2879 reads, 313.0 reads per million, 9 experiments

UCCUUCAGGUCUGCUUUGGUCauugguugaucuuccaugguugaucaagcaaagaaaagagacaggagaaagccugcucugaugccacuugauacagcggaagUCGUACUAGGAUUGCAAGCGCaaauccuaagga
(((((.(((..((((((((((.((((((((.(((((...((((((((((........((((.((((......)))))))).......)))))).)))))))))))).)))))))))).))))).....))))))))

Structure

     C   ---UC     -     a     -   u     aug    -      caaagaaa    a    ag 
UCCUU AGG     UGCUU UGGUC uuggu uga cuucc   guug aucaag        agag cagg  a
||||| |||     ||||| ||||| ||||| ||| |||||   |||| ||||||        |||| ||||   
aggaa ucc     GCGAA GUUAG GAUCA GCU gaagg   cgac uaguuc        ucuc gucc  a
     -   uaaaC     C     -     U   -     ---    a      -accguag    -    ga 

Annotation confidence Low

Genome context

Chr1: 16339645-16339780 [-]

Mature lja-miR11075a-5p

• Accession: MIMAT0054616
• Description: Lotus japonicus lja-miR11075a-5p mature miRNA
• Sequence: 1 - UCCUUCAGGUCUGCUUUGGUC - 21
• Evidence: experimental ; unknown

Mature lja-miR11075a-3p

• Accession: MIMAT0043714
• Description: Lotus japonicus lja-miR11075a-3p mature miRNA
• Sequence: 104 - UCGUACUAGGAUUGCAAGCGC - 124
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 25967282
   micro RNA 172 (miR172) signals epidermal infection and is expressed in cells primed for bacterial invasion in Lotus japonicus roots and nodules
   "Holt DB, Gupta V, Meyer D, Abel NB, Andersen SU, Stougaard J, Markmann K"
   "New Phytol (2015) 208:241-256