Stem-loop lja-MIR11076

Accession

MI0035748

Description

Lotus japonicus lja-MIR11076 precursor miRNA

Sequence

25085 reads, 2476.0 reads per million, 9 experiments

uaauggaaaccacaauaCCGAUGGCAGUGAAGGGAACaagugcaauaaccacaauaccgacaaaugaagcuaacguuggguuguugcacuCGUUCCCUUCACUGCCAUCGGuauuguggcguuuguua
(((((((..((((((((((((((((((((((((((((.((((((((((((.((((...................)))))))))))))))).))))))))))))))))))))))))))))..)))))))

Structure

       aa                            a            a    accgacaa 
uaaugga  ccacaauaCCGAUGGCAGUGAAGGGAAC agugcaauaacc caau        a
|||||||  |||||||||||||||||||||||||||| |||||||||||| ||||        u
auuguuu  gguguuauGGCUACCGUCACUUCCCUUG ucacguuguugg guug        g
       gc                            C            -    caaucgaa 

Annotation confidence High

Genome context

Chr2: 43039313-43039440 [+]

Mature lja-miR11076-5p

• Accession: MIMAT0043715
• Description: Lotus japonicus lja-miR11076-5p mature miRNA
• Sequence: 18 - CCGAUGGCAGUGAAGGGAAC - 37
• Evidence: experimental ; Illumina [1]

Mature lja-miR11076-3p

• Accession: MIMAT0043716
• Description: Lotus japonicus lja-miR11076-3p mature miRNA
• Sequence: 91 - CGUUCCCUUCACUGCCAUCGG - 111
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 25967282
   micro RNA 172 (miR172) signals epidermal infection and is expressed in cells primed for bacterial invasion in Lotus japonicus roots and nodules
   "Holt DB, Gupta V, Meyer D, Abel NB, Andersen SU, Stougaard J, Markmann K"
   "New Phytol (2015) 208:241-256