Stem-loop lja-MIR11077a

Accession

MI0035749

Description

Lotus japonicus lja-MIR11077a precursor miRNA

Sequence

3235 reads, 484.0 reads per million, 9 experiments

gaaagaaaacacgaaaaUCGAGGAGUGAAUUUGGACUAAaccuuaguccaaauucacuCCUCGAUUUCCGUGUUUUCuuuc
(((((((((((((.(((((((((((((((((((((((((...))))))))))))))))))))))))).)))))))))))))

Structure

             a                         a 
gaaagaaaacacg aaaUCGAGGAGUGAAUUUGGACUAA  
||||||||||||| ||||||||||||||||||||||||| c
cuuuCUUUUGUGC UUUAGCUCCucacuuaaaccugauu  
             C                         c 

Annotation confidence Low

Genome context

Chr1: 63845309-63845389 [-]

Mature lja-miR11077a-5p

• Accession: MIMAT0043717
• Description: Lotus japonicus lja-miR11077a-5p mature miRNA
• Sequence: 18 - UCGAGGAGUGAAUUUGGACUAA - 39
• Evidence: experimental ; Illumina [1]

Mature lja-miR11077a-3p

• Accession: MIMAT0043718
• Description: Lotus japonicus lja-miR11077a-3p mature miRNA
• Sequence: 59 - CCUCGAUUUCCGUGUUUUC - 77
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 25967282
   micro RNA 172 (miR172) signals epidermal infection and is expressed in cells primed for bacterial invasion in Lotus japonicus roots and nodules
   "Holt DB, Gupta V, Meyer D, Abel NB, Andersen SU, Stougaard J, Markmann K"
   "New Phytol (2015) 208:241-256