Stem-loop lja-MIR11078a

Accession

MI0035750

Description

Lotus japonicus lja-MIR11078a precursor miRNA

Sequence

10280 reads, 1294.0 reads per million, 9 experiments

uguauuagccguguaaaguuuuuuuacacaaUCAACCAAUUAGAUUUCAuagauuuuuuaugucagucaauuuaauuaaauaaaaaaucuauauuuuucauacucaUGAAAUCUGAUUGGUUGACGGUGUuaaaaaacuuuacacugucuaca
((((...((.((((((((((((((.((((..((((((((((((((((((((((((((((((..................))))))))))))...............))))))))))))))))))..)))).)))))))))))))).)).))))

Structure

    uua  c              u    aa                  ---------------            gucaguca 
ugua   gc guguaaaguuuuuu acac  UCAACCAAUUAGAUUUCA               uagauuuuuuau        a
||||   || |||||||||||||| ||||  ||||||||||||||||||               ||||||||||||         
acau   ug cacauuucaaaaaa UGUG  AGUUGGUUAGUCUAAAGU               aucuaaaaaaua        u
    --c  u              u    GC                  acucauacuuuuuau            aauuaauu 

Annotation confidence Low

Genome context

Chr0: 13855385-13855537 [+]

Mature lja-miR11078a-5p

• Accession: MIMAT0054617
• Description: Lotus japonicus lja-miR11078a-5p mature miRNA
• Sequence: 32 - UCAACCAAUUAGAUUUCA - 49
• Evidence: experimental ; unknown

Mature lja-miR11078a-3p

• Accession: MIMAT0043719
• Description: Lotus japonicus lja-miR11078a-3p mature miRNA
• Sequence: 107 - UGAAAUCUGAUUGGUUGACGGUGU - 130
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 25967282
   micro RNA 172 (miR172) signals epidermal infection and is expressed in cells primed for bacterial invasion in Lotus japonicus roots and nodules
   "Holt DB, Gupta V, Meyer D, Abel NB, Andersen SU, Stougaard J, Markmann K"
   "New Phytol (2015) 208:241-256