Stem-loop lja-MIR11078b

Accession

MI0035751

Description

Lotus japonicus lja-MIR11078b precursor miRNA

Sequence

15480 reads, 1635.0 reads per million, 9 experiments

guguaaaguuuuuuuagagcgucaacuaauuagaUUGUAAGGAUAUGUCACGUCAauuaaugaaauuaaauaaauauuuuacacauucuuaAAAUCUGAUUGGUUGACGGUGUAAauaaacuuuacac
(((((((((((.((((.(.(((((((((((((((((.(((((((.(((.............(((((.........)))))))).))))))).))))))))))))))))).).)))).)))))))))))

Structure

           u    g g                 G       A   CACGUCAauuaau     uaa 
guguaaaguuu uuua a cgucaacuaauuagaUU UAAGGAU UGU             gaaau   a
||||||||||| |||| | ||||||||||||||||| ||||||| |||             |||||   u
cacauuucaaa aAAU U GCAGUUGGUUAGUCUAA auucuua aca             uuuua   a
           u    G G                 A       c   -------------     uaa 

Annotation confidence Low

Genome context

Chr1: 20357567-20357694 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from lja-MIR11078b

Mature lja-miR11078b-5p

• Accession: MIMAT0054618
• Description: Lotus japonicus lja-miR11078b-5p mature miRNA
• Sequence: 35 - UUGUAAGGAUAUGUCACGUCA - 55
• Evidence: experimental ; unknown

Mature lja-miR11078b-3p

• Accession: MIMAT0043720
• Description: Lotus japonicus lja-miR11078b-3p mature miRNA
• Sequence: 92 - AAAUCUGAUUGGUUGACGGUGUAA - 115
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 25967282
   micro RNA 172 (miR172) signals epidermal infection and is expressed in cells primed for bacterial invasion in Lotus japonicus roots and nodules
   "Holt DB, Gupta V, Meyer D, Abel NB, Andersen SU, Stougaard J, Markmann K"
   "New Phytol (2015) 208:241-256