Stem-loop lja-MIR11078c

Accession

MI0035752

Description

Lotus japonicus lja-MIR11078c precursor miRNA

Sequence

19336 reads, 1907.0 reads per million, 9 experiments

uugaugcaccgACCGUCAACCAAUCAGAUUUcaaagaugugacauguuuauuaaagaaauuaaauaaaaaaauagauuuucucacauccuuaAAAUCUGAUUGGUUGACGGUGUAAaggugcaucaaacuuuuucuc
((((((((((.((((((((((((((((((((.((.(((((((...(((((((..................)))))))....))))))).)).)))))))))))))))))))).....))))))))))..........

Structure

----------          ----g                    c  a       -cau       aaagaaau 
          uugaugcacc     ACCGUCAACCAAUCAGAUUU aa gauguga    guuuauu        u
          ||||||||||     |||||||||||||||||||| || |||||||    |||||||         
          aacuacgugg     UGGCAGUUGGUUAGUCUAAA uu cuacacu    uagauaa        a
cucuuuuuca          aAAUG                    a  c       cuuu       aaaaauaa 

Annotation confidence Low

Genome context

Chr1: 58208210-58208346 [-]

Mature lja-miR11078c-5p

• Accession: MIMAT0043721
• Description: Lotus japonicus lja-miR11078c-5p mature miRNA
• Sequence: 12 - ACCGUCAACCAAUCAGAUUU - 31
• Evidence: experimental ; Illumina [1]

Mature lja-miR11078c-3p

• Accession: MIMAT0043722
• Description: Lotus japonicus lja-miR11078c-3p mature miRNA
• Sequence: 93 - AAAUCUGAUUGGUUGACGGUGUAA - 116
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 25967282
   micro RNA 172 (miR172) signals epidermal infection and is expressed in cells primed for bacterial invasion in Lotus japonicus roots and nodules
   "Holt DB, Gupta V, Meyer D, Abel NB, Andersen SU, Stougaard J, Markmann K"
   "New Phytol (2015) 208:241-256