Stem-loop lja-MIR11078d

Accession

MI0035753

Description

Lotus japonicus lja-MIR11078d precursor miRNA

Sequence

uuugaugcacugaccguguaaauuuuuuuuaaaaagucaaccaauuagauuucaaagauuggucauuucauucaauuuaauuaaauaagaaaaaaucuaucuuuaccacauucaugAAAUCUGAUUGGUUGACGGUguaaaaaaacuuugcaccguuggugcaucaaa
.(((((((((((((.(((((((.((((((((....((((((((((((((((((((((((.(((..((((...................))))..))).)))))...........)))))))))))))))))))....)))))))).))))))).))))))))))))).

Structure

u             c       u        aaaa                   -----------     u   ca    auucaauu 
 uugaugcacugac guguaaa uuuuuuua    gucaaccaauuagauuuca           aagau ggu  uuuc        u
 ||||||||||||| ||||||| ||||||||    |||||||||||||||||||           ||||| |||  ||||        a
 aacuacgugguug cacguuu aaaaaaau    CAGUUGGUUAGUCUAAAgu           uucua cua  aaag        a
a             c       c        gUGG                   acuuacaccau     u   aa    aauaaauu 

Annotation confidence Not enough data

Genome context

Chr2: 17076193-17076360 [-]

Mature lja-miR11078d-3p

• Accession: MIMAT0043723
• Description: Lotus japonicus lja-miR11078d-3p mature miRNA
• Sequence: 117 - AAAUCUGAUUGGUUGACGGU - 136
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 25967282
   micro RNA 172 (miR172) signals epidermal infection and is expressed in cells primed for bacterial invasion in Lotus japonicus roots and nodules
   "Holt DB, Gupta V, Meyer D, Abel NB, Andersen SU, Stougaard J, Markmann K"
   "New Phytol (2015) 208:241-256