Stem-loop lja-MIR11079

Accession

MI0035754

Description

Lotus japonicus lja-MIR11079 precursor miRNA

Sequence

8462 reads, 972.0 reads per million, 9 experiments

guuggggagagucacgacgAGGACCCAUGGGCCAAGGCCaaggggagauaccaaggagaucuuggacaccacaucuuaaccuagagccuuaaggUUUUGGGUUAAGAUGUGGUGUCcaauaucuccuugguguuuccccucgaccuugucccauggguccucguugugacucuccccaac
(((((((((((((((((((((((((((((((.(((((.(.((((((((((((((((((((.(((((((((((((((((((((((((((....))))))))))))))))))))))))))).)))))))))))))))))))).).))))).)))))))))))))))))))))))))))))))

Structure

                               C     C a                    c                           u 
guuggggagagucacgacgAGGACCCAUGGG CAAGG C aggggagauaccaaggagau uuggacaccacaucuuaaccuagagcc u
||||||||||||||||||||||||||||||| ||||| | |||||||||||||||||||| |||||||||||||||||||||||||||  
caaccccucucaguguugcuccuggguaccc guucc g uccccuuugugguuccucua aacCUGUGGUGUAGAAUUGGGUUUUgg a
                               u     a c                    u                           a 

Annotation confidence Low

Genome context

Chr4: 25823394-25823573 [-]

Mature lja-miR11079-5p

• Accession: MIMAT0043724
• Description: Lotus japonicus lja-miR11079-5p mature miRNA
• Sequence: 20 - AGGACCCAUGGGCCAAGGCC - 39
• Evidence: experimental ; Illumina [1]

Mature lja-miR11079-3p

• Accession: MIMAT0043725
• Description: Lotus japonicus lja-miR11079-3p mature miRNA
• Sequence: 95 - UUUUGGGUUAAGAUGUGGUGUC - 116
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 25967282
   micro RNA 172 (miR172) signals epidermal infection and is expressed in cells primed for bacterial invasion in Lotus japonicus roots and nodules
   "Holt DB, Gupta V, Meyer D, Abel NB, Andersen SU, Stougaard J, Markmann K"
   "New Phytol (2015) 208:241-256