Stem-loop lja-MIR164

Accession

MI0035755

Description

Lotus japonicus lja-MIR164 precursor miRNA

Literature search

2 open access papers mention lja-MIR164
(2 sentences)

Sequence

39527 reads, 3080.0 reads per million, 9 experiments

gauuggaguggagggugaaccacgcUGGAGAAGCAGGGCACAUGCuugaccucucgaaauuaaucuUCUGAUCGAGCAUAUGCUCUGGCUcuccagcauggauucuuucuccuacaauu
(((((....((((((.((((((.((((((((..(((((((.((((((((..((..(((.......))).)))))))))).)))))))..)))))))).))).))).))))))..)))))

Structure

     gagu      u   -   c        AG       C        cc  uc   au 
gauug    ggaggg gaa cca gcUGGAGA  CAGGGCA AUGCuuga  uc  gaa  u
|||||    |||||| ||| ||| ||||||||  ||||||| ||||||||  ||  |||  a
uuaac    ccucuu cuu ggu cgaccucU  GUCUCGU UACGAGCU  AG  CUu  a
     --au      u   a   a        CG       A        --  -U   cu 

Annotation confidence Medium

Genome context

Chr3: 34602134-34602252 [-]

Mature lja-miR164-5p

• Accession: MIMAT0043726
• Description: Lotus japonicus lja-miR164-5p mature miRNA
• Sequence: 26 - UGGAGAAGCAGGGCACAUGC - 45
• Evidence: experimental ; Illumina [1]

Mature lja-miR164-3p

• Accession: MIMAT0061472
• Description: Lotus japonicus lja-miR164-3p mature miRNA
• Sequence: 67 - UCUGAUCGAGCAUAUGCUCUGGCU - 90
• Evidence: experimental ; unknown

References

1. PubMed ID: 25967282
   micro RNA 172 (miR172) signals epidermal infection and is expressed in cells primed for bacterial invasion in Lotus japonicus roots and nodules
   "Holt DB, Gupta V, Meyer D, Abel NB, Andersen SU, Stougaard J, Markmann K"
   "New Phytol (2015) 208:241-256