Stem-loop lja-MIR11080

Accession

MI0035756

Description

Lotus japonicus lja-MIR11080 precursor miRNA

Sequence

1132 reads, 142.0 reads per million, 8 experiments

caugugUAAAAAAACUUGAGAGUGUCAagugucaucaucucaccauuaauuuuauuuuauuuuauuuuucauuuauuaucuacacaaaaguuaauagUGAGAUGGUAAAACUUGACACUcacaaauuuuuuuacacuug
((.(((((((((((.(((.(((((((((((...((((((((((.(((((((((.................................))))))))).))))))))))...))))))))))).))).))))))))))).))

Structure

  u           C   A           guc          c         auuuuauuuuauuuu 
ca gugUAAAAAAA UUG GAGUGUCAagu   aucaucucac auuaauuuu               u
|| ||||||||||| ||| |||||||||||   |||||||||| |||||||||               c
gu cacauuuuuuu aac cUCACAGUUCA   UGGUAGAGUg uaauugaaa               a
  u           a   a           AAA          a         acacaucuauuauuu 

Annotation confidence Low

Genome context

Chr2: 30350118-30350256 [-]

Mature lja-miR11080-5p

• Accession: MIMAT0054619
• Description: Lotus japonicus lja-miR11080-5p mature miRNA
• Sequence: 7 - UAAAAAAACUUGAGAGUGUCA - 27
• Evidence: experimental ; unknown

Mature lja-miR11080-3p

• Accession: MIMAT0043727
• Description: Lotus japonicus lja-miR11080-3p mature miRNA
• Sequence: 98 - UGAGAUGGUAAAACUUGACACU - 119
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 25967282
   micro RNA 172 (miR172) signals epidermal infection and is expressed in cells primed for bacterial invasion in Lotus japonicus roots and nodules
   "Holt DB, Gupta V, Meyer D, Abel NB, Andersen SU, Stougaard J, Markmann K"
   "New Phytol (2015) 208:241-256