Stem-loop lja-MIR11072c

Accession

MI0035757

Description

Lotus japonicus lja-MIR11072c precursor miRNA

Sequence

43536 reads, 3424.0 reads per million, 9 experiments

agauuuuggguuaauccucuaaUUGGUCCCUGUGGUUGUGUgaccaucugaaauuagucccucccguaaaaucuaaguccucguguuugaaaaaguguguguagcagguccucgccggagggacuaauuuccacacacuuuccaaacacgaggacuuagauuuuacgggagggacuAAUUUCAGACGGCCACACAAccacagggacuaauuagaggauuaaccccauauuu
.......(((((((((((((((((((((((((((((((((((.((.(((((((((((((((((((((((((((((((((((((((((((..((((((((((.....(((((((....)).)))))......)))))))))).))))))))))))))))))))))))))))))))))))))))))).)).))))))))))))))))))))))))))))))))))).......

Structure

agauuuu                                   a  a                                           aa          -uagca     -  g 
       ggguuaauccucuaaUUGGUCCCUGUGGUUGUGUg cc ucugaaauuagucccucccguaaaaucuaaguccucguguuug  aaagugugug      ggucc uc c
       ||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||  ||||||||||      ||||| ||  
       cccaauuaggagauuaaucagggacaccAACACAC GG AGACUUUAAucagggagggcauuuuagauucaggagcacaaac  uuucacacac      ucagg ag c
uuuauac                                   C  C                                           -c          cuuuaa     g  g 

Annotation confidence Low

Genome context

Chr0: 6894218-6894448 [+]

Mature lja-miR11072c-5p

• Accession: MIMAT0054620
• Description: Lotus japonicus lja-miR11072c-5p mature miRNA
• Sequence: 23 - UUGGUCCCUGUGGUUGUGU - 41
• Evidence: experimental ; unknown

Mature lja-miR11072c-3p

• Accession: MIMAT0043728
• Description: Lotus japonicus lja-miR11072c-3p mature miRNA
• Sequence: 177 - AAUUUCAGACGGCCACACAA - 196
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 25967282
   micro RNA 172 (miR172) signals epidermal infection and is expressed in cells primed for bacterial invasion in Lotus japonicus roots and nodules
   "Holt DB, Gupta V, Meyer D, Abel NB, Andersen SU, Stougaard J, Markmann K"
   "New Phytol (2015) 208:241-256