Stem-loop lja-MIR11072d

Accession

MI0035758

Description

Lotus japonicus lja-MIR11072d precursor miRNA

Sequence

61636 reads, 5017.0 reads per million, 9 experiments

aggguuaauccucuaaUUGGUCCCUGUGGUUGUGUggccgucugaaauuagucccucccguaaaaucuaaguccucguguuuggaaaguguguggaaauuagucucuccgacgaggaccugcuacacacacuuuuucaaacacgaggacuuagauuuuacgggagGGACUAAUUUCAGACGGCcacagggaccaauuagaagauuaacccu
((((((((((.((((((((((((((((........(((((((((((((((((((((((((((((((((((((((((((((((((((((((((((.......(((.(((....))))))......))))))).)))))))))))))))))))))))))))))))))))))))))))))))))))))))))))))))))))).))))))))))

Structure

          c                GGUUGUGU                                                    -       gaaauua   u   c 
aggguuaauc ucuaaUUGGUCCCUGU        ggccgucugaaauuagucccucccguaaaaucuaaguccucguguuuggaaa gugugug       guc cuc g
|||||||||| ||||||||||||||||        |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||       ||| |||  
ucccaauuag agauuaaccagggaca        cCGGCAGACUUUAAUCAGGgagggcauuuuagauucaggagcacaaacuuuu cacacac       cag gag a
          a                --------                                                    u       -aucguc   -   c 

Annotation confidence Low

Genome context

Chr1: 31308678-31308888 [-]

Mature lja-miR11072d-5p

• Accession: MIMAT0054621
• Description: Lotus japonicus lja-miR11072d-5p mature miRNA
• Sequence: 17 - UUGGUCCCUGUGGUUGUGU - 35
• Evidence: experimental ; unknown

Mature lja-miR11072d-3p

• Accession: MIMAT0043729
• Description: Lotus japonicus lja-miR11072d-3p mature miRNA
• Sequence: 166 - GGACUAAUUUCAGACGGC - 183
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 25967282
   micro RNA 172 (miR172) signals epidermal infection and is expressed in cells primed for bacterial invasion in Lotus japonicus roots and nodules
   "Holt DB, Gupta V, Meyer D, Abel NB, Andersen SU, Stougaard J, Markmann K"
   "New Phytol (2015) 208:241-256