miRBase entry: lja-MIR11072e

Stem-loop lja-MIR11072e


Accession
MI0035759
Description
Lotus japonicus lja-MIR11072e precursor miRNA


Sequence

38936 reads, 2845.0 reads per million, 9 experiments
uaaaauuaaggguuaauccucuacUUGGUCCCUGUGGUUGUGUggccaucugaaauuagucccuccccgaaaaaucugaaaaucuaaguccucgcguuugaaaaaguguguguagcagguccucgucggagggacuaauuuccacacacuuuccaaacccgagaacuuagauuuucagauuuuccggggagggacuAAUUUCAGACGGCCACACAAccacagggaccaaguagaggauuaucccuaaaauuaagua
........((((.((((((((((((((((((((((((((((((((((.(((((((((((((((((((((.(((((((((((((((((((.((((.(((((..((((((((((.....(((((((....)).)))))......)))))))))).))))).)))).))))))))))))))))))).))))))))))))))))))))).)))))))))))))))))))))))))))))))))).))))...........

Structure
---uaaaauua    u                                  a                     a                   c    c     aa          -uagca     -  g 
           aggg uaauccucuacUUGGUCCCUGUGGUUGUGUggcc ucugaaauuagucccuccccg aaaaucugaaaaucuaagu cucg guuug  aaagugugug      ggucc uc u
           |||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||| |||| |||||  ||||||||||      ||||| ||  
           uccc auuaggagaugaaccagggacaccAACACACCGG AGACUUUAAucagggaggggc uuuuagacuuuuagauuca gagc caaac  uuucacacac      ucagg ag c
augaauuaaaa    u                                  C                     c                   a    c     -c          cuuuaa     g  g 


Annotation confidence Low
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Genome context
Chr2: 26431063-26431318 [+]

Database links

Mature lja-miR11072e-5p

Accession MIMAT0054622
Description Lotus japonicus lja-miR11072e-5p mature miRNA
Sequence 25 - UUGGUCCCUGUGGUUGUGU - 43
Evidence experimental
unknown

Mature lja-miR11072e-3p

Accession MIMAT0043730
Description Lotus japonicus lja-miR11072e-3p mature miRNA
Sequence 197 - AAUUUCAGACGGCCACACAA - 216
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 25967282
    micro RNA 172 (miR172) signals epidermal infection and is expressed in cells primed for bacterial invasion in Lotus japonicus roots and nodules
    "Holt DB, Gupta V, Meyer D, Abel NB, Andersen SU, Stougaard J, Markmann K"
    "New Phytol (2015) 208:241-256