Stem-loop lja-MIR11072h

Accession

MI0035760

Description

Lotus japonicus lja-MIR11072h precursor miRNA

Sequence

aaaggauauauuaauugaaggguuaauccucuaauuggucccugugguuguguggccgucugaaauuagucucucccguaaaaucuaaguccucgcguuugaaaaaguguguguagcagguccucgccggagggacuaauuuccacacacuuuucaaacgcgaggacuuagauuuuacgggAGGGACUAAUUUCAGACGGCcacacaaccauagggaccaauuagaggauuaucccuuaauugaauguga
.....((((.((((((((.(((.((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((.(((((((.....(((((((....)).)))))......))))))))))))))))))))))))))))))))))))))))))))))))))))))))))))))))))))))))))))))))))))))))).)))))))))))))))..

Structure

aaagg    a        a   u                                                                                  a       -uagca     -  g 
     auau uuaauuga ggg uaauccucuaauuggucccugugguuguguggccgucugaaauuagucucucccguaaaaucuaaguccucgcguuugaaaa gugugug      ggucc uc c
     |||| |||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||      ||||| ||  
     ugua aguuaauu ccc auuaggagauuaaccagggauaccaacacacCGGCAGACUUUAAUCAGGGAgggcauuuuagauucaggagcgcaaacuuuu cacacac      ucagg ag c
---ag    -        -   u                                                                                  -       cuuuaa     g  g 

Annotation confidence Low

Genome context

Chr2: 30326222-30326471 [-]

Mature lja-miR11072h-3p

• Accession: MIMAT0043731
• Description: Lotus japonicus lja-miR11072h-3p mature miRNA
• Sequence: 182 - AGGGACUAAUUUCAGACGGC - 201
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 25967282
   micro RNA 172 (miR172) signals epidermal infection and is expressed in cells primed for bacterial invasion in Lotus japonicus roots and nodules
   "Holt DB, Gupta V, Meyer D, Abel NB, Andersen SU, Stougaard J, Markmann K"
   "New Phytol (2015) 208:241-256