Stem-loop lja-MIR11072f

Accession

MI0035761

Description

Lotus japonicus lja-MIR11072f precursor miRNA

Sequence

21076 reads, 1732.0 reads per million, 9 experiments

gCCGUCUGAAAUUAGUCCCUCCcguaaaaucuaaguccucgcguuugaaaagugugugaaaauuaguccucuggcgaggaccugcuacacacacuuuuucaaacucgaggacuuagauuuuacgggagGGACUAAUUUCAGACGGC
(((((((((((((((((((((((((((((((((((((((((.((((((((((((((((.......((((((....))))))......))))))).))))))))).)))))))))))))))))))))))))))))))))))))))))

Structure

                                         c         -       aaaauua      u 
gCCGUCUGAAAUUAGUCCCUCCcguaaaaucuaaguccucg guuugaaaa gugugug       guccuc g
||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||       ||||||  
CGGCAGACUUUAAUCAGGgagggcauuuuagauucaggagc caaacuuuu cacacac       caggag g
                                         u         u       -aucguc      c 

Annotation confidence Low

Genome context

Chr2: 14340189-14340334 [-]

Mature lja-miR11072f-5p

• Accession: MIMAT0054624
• Description: Lotus japonicus lja-miR11072f-5p mature miRNA
• Sequence: 2 - CCGUCUGAAAUUAGUCCCUCC - 22
• Evidence: experimental ; unknown

Mature lja-miR11072f-3p

• Accession: MIMAT0043732
• Description: Lotus japonicus lja-miR11072f-3p mature miRNA
• Sequence: 129 - GGACUAAUUUCAGACGGC - 146
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 25967282
   micro RNA 172 (miR172) signals epidermal infection and is expressed in cells primed for bacterial invasion in Lotus japonicus roots and nodules
   "Holt DB, Gupta V, Meyer D, Abel NB, Andersen SU, Stougaard J, Markmann K"
   "New Phytol (2015) 208:241-256