Stem-loop lja-MIR11072g

Accession

MI0035762

Description

Lotus japonicus lja-MIR11072g precursor miRNA

Sequence

15971 reads, 1235.0 reads per million, 9 experiments

uggccgucugaaauuugucccuccccggaaaaucugaaaaucuaaguccucgggUUUGGAAAGUGUGUGGAAAUUAGUcccucuggcgaggaccugcuacacacauuuuuucaaaugcgaggacuuagauuuuuagauuuuccggggagGGACUAAUUUCAGACGGCca
(((((((((((((((.((((((((((((((((((((((((((((((((((((.(((((((((((((((((....(((..((((....))))..)))))))))))...))))))))).)))))))))))))))))))))))))))))))))))).)))))))))))))))

Structure

               u                                    g         ---        AAAU   Uc    u 
uggccgucugaaauu gucccuccccggaaaaucugaaaaucuaaguccucg gUUUGGAAA   GUGUGUGG    UAG  ccuc g
||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||   ||||||||    |||  ||||  
acCGGCAGACUUUAA CAGGgaggggccuuuuagauuuuuagauucaggagc uaaacuuuu   cacacauc    guc  ggag g
               U                                    g         uua        ----   ca    c 

Annotation confidence Low

Genome context

Chr3: 36812896-36813064 [+]

Mature lja-miR11072g-5p

• Accession: MIMAT0054625
• Description: Lotus japonicus lja-miR11072g-5p mature miRNA
• Sequence: 55 - UUUGGAAAGUGUGUGGAAAUUAGU - 78
• Evidence: experimental ; unknown

Mature lja-miR11072g-3p

• Accession: MIMAT0043733
• Description: Lotus japonicus lja-miR11072g-3p mature miRNA
• Sequence: 150 - GGACUAAUUUCAGACGGC - 167
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 25967282
   micro RNA 172 (miR172) signals epidermal infection and is expressed in cells primed for bacterial invasion in Lotus japonicus roots and nodules
   "Holt DB, Gupta V, Meyer D, Abel NB, Andersen SU, Stougaard J, Markmann K"
   "New Phytol (2015) 208:241-256