Stem-loop lja-MIR11081

Accession

MI0035763

Description

Lotus japonicus lja-MIR11081 precursor miRNA

Sequence

4500 reads, 506.0 reads per million, 9 experiments

ggacccaauuugaugcgaaaauuuuacagggaccagauuugauucccuuUACAAUUUCAAGGACCAAAAGAauauuuaaaccaauuauauauguuaaaauuaaaauaggcuuaauacaucagaagacccuugaaauuguaaAGGGAAUCAGUUCCAGGGCCUGuaaaauuuucgcaucaaauugggucc
((((((((((((((((((((((((((((((..((.((.((((((((((((((((((((((((.......((....((((.((.(((.((...........)).))).)).))))....)).......)))))))))))))))))))))))).))..)).))))))))))))))))))))))))))))))

Structure

                              ga  -a  u                        ACCAAAA  auau    a  a   a  uaug 
ggacccaauuugaugcgaaaauuuuacagg  cc  ga uugauucccuuUACAAUUUCAAGG       GA    uuaa cc auu ua    u
||||||||||||||||||||||||||||||  ||  || ||||||||||||||||||||||||       ||    |||| || ||| ||    u
ccuggguuaaacuacgcuuuuaaaauGUCC  GG  CU GACUAAGGGAaauguuaaaguucc       cu    aauu gg uaa au    a
                              -G  AC  U                        cagaaga  acau    c  a   a  uaaa 

Annotation confidence Low

Genome context

Chr0: 17305888-17306076 [+]

Mature lja-miR11081-5p

• Accession: MIMAT0054626
• Description: Lotus japonicus lja-miR11081-5p mature miRNA
• Sequence: 50 - UACAAUUUCAAGGACCAAAAGA - 71
• Evidence: experimental ; unknown

Mature lja-miR11081-3p

• Accession: MIMAT0043734
• Description: Lotus japonicus lja-miR11081-3p mature miRNA
• Sequence: 142 - AGGGAAUCAGUUCCAGGGCCUG - 163
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 25967282
   micro RNA 172 (miR172) signals epidermal infection and is expressed in cells primed for bacterial invasion in Lotus japonicus roots and nodules
   "Holt DB, Gupta V, Meyer D, Abel NB, Andersen SU, Stougaard J, Markmann K"
   "New Phytol (2015) 208:241-256