Stem-loop lja-MIR11082c

Accession

MI0035766

Description

Lotus japonicus lja-MIR11082c precursor miRNA

Sequence

18670 reads, 1750.0 reads per million, 9 experiments

ggaacaggguagauuccCGCCGAUAGCUUUUUGUGUGguuucuuuacgggaauCACAGAGAGUUGGUUGGACUUAggaggucuuguuuu
.(((((((.....((((.(((((((((((((..((((((((((....))))))))))))))))).))))).)...))))..))))))).

Structure

g       guaga    --C -     -       UG          u 
 gaacagg     uucc   G CCGAU AGCUUUU  UGUGguuucu u
 |||||||     ||||   | ||||| |||||||  ||||||||||  
 uuuguuc     gagg   C GGUUG UUGAGAG  ACACuaaggg a
u       ---ug    AUU A     G       --          c 

Annotation confidence Medium

Genome context

Chr0: 4697921-4698009 [+]

Mature lja-miR11082c-5p

• Accession: MIMAT0054629
• Description: Lotus japonicus lja-miR11082c-5p mature miRNA
• Sequence: 18 - CGCCGAUAGCUUUUUGUGUG - 37
• Evidence: experimental ; unknown

Mature lja-miR11082c-3p

• Accession: MIMAT0043737
• Description: Lotus japonicus lja-miR11082c-3p mature miRNA
• Sequence: 54 - CACAGAGAGUUGGUUGGACUUA - 75
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 25967282
   micro RNA 172 (miR172) signals epidermal infection and is expressed in cells primed for bacterial invasion in Lotus japonicus roots and nodules
   "Holt DB, Gupta V, Meyer D, Abel NB, Andersen SU, Stougaard J, Markmann K"
   "New Phytol (2015) 208:241-256