Stem-loop lja-MIR11082d

Accession

MI0035767

Description

Lotus japonicus lja-MIR11082d precursor miRNA

Sequence

13082 reads, 1360.0 reads per million, 9 experiments

ggggacaggguaguuuccuaCCUAUAGCUUUUUGUGUGauucuuuacgagaauCACAGAGAGUUGGUUGGACUUAggaggucuugcuuc
((((.(((((...(((((((((..((((((((..((((((((((...))))))))))))))))))...))...))))))))))))))))

Structure

    a     uag       ---  -UA        UG          u 
gggg caggg   uuuccua   CC   UAGCUUUU  UGUGauucuu  
|||| |||||   |||||||   ||   ||||||||  |||||||||| a
cuuc guucu   ggaggAU   GG   GUUGAGAG  ACACuaagag  
    -     ---       UCA  UUG        --          c 

Annotation confidence Low

Genome context

Chr1: 3254600-3254688 [+]

Mature lja-miR11082d-5p

• Accession: MIMAT0054630
• Description: Lotus japonicus lja-miR11082d-5p mature miRNA
• Sequence: 21 - CCUAUAGCUUUUUGUGUG - 38
• Evidence: experimental ; unknown

Mature lja-miR11082d-3p

• Accession: MIMAT0043738
• Description: Lotus japonicus lja-miR11082d-3p mature miRNA
• Sequence: 54 - CACAGAGAGUUGGUUGGACUUA - 75
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 25967282
   micro RNA 172 (miR172) signals epidermal infection and is expressed in cells primed for bacterial invasion in Lotus japonicus roots and nodules
   "Holt DB, Gupta V, Meyer D, Abel NB, Andersen SU, Stougaard J, Markmann K"
   "New Phytol (2015) 208:241-256