Stem-loop lja-MIR11082e

Accession

MI0035768

Description

Lotus japonicus lja-MIR11082e precursor miRNA

Sequence

17764 reads, 1672.0 reads per million, 9 experiments

cgggacaggguaguuucccaccuauagcUUUUGUGUGGUUUCUUUACGGGAauCACAGAGAGUUGGUUGGACUUAggaggucuug
((((((....(((..(((.(((...(((((((.((((((((((....)))))))))))))))))))).))).)))....))))))

Structure

      aggg   uu   c   uau       G          U 
cgggac    uag  ucc acc   agcUUUU UGUGGUUUCU U
||||||    |||  ||| |||   ||||||| ||||||||||  
guucug    AUU  AGG UGG   UUGAGAG ACACuaAGGG A
      gagg   -C   U   ---       -          C 

Annotation confidence Low

Genome context

Chr3: 20995344-20995428 [+]

Mature lja-miR11082e-5p

• Accession: MIMAT0054631
• Description: Lotus japonicus lja-miR11082e-5p mature miRNA
• Sequence: 29 - UUUUGUGUGGUUUCUUUACGGGA - 51
• Evidence: experimental ; unknown

Mature lja-miR11082e-3p

• Accession: MIMAT0043739
• Description: Lotus japonicus lja-miR11082e-3p mature miRNA
• Sequence: 54 - CACAGAGAGUUGGUUGGACUUA - 75
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 25967282
   micro RNA 172 (miR172) signals epidermal infection and is expressed in cells primed for bacterial invasion in Lotus japonicus roots and nodules
   "Holt DB, Gupta V, Meyer D, Abel NB, Andersen SU, Stougaard J, Markmann K"
   "New Phytol (2015) 208:241-256