Stem-loop lja-MIR11082f

Accession

MI0035769

Description

Lotus japonicus lja-MIR11082f precursor miRNA

Sequence

11556 reads, 1130.0 reads per million, 9 experiments

ucuuuugggacaggguAGUUUCCCACCUAUAGCUUUUgugugguucuuuacgagaauCACAGAGAGUUGGUUGGACUUAggagg
.((((((((...(((......))).((..((((((((.((((((((((...))))))))))))))))))...)).)))))))).

Structure

u        acaggguAGUUUCCCA  -UA        g          u 
 cuuuuggg                CC   UAGCUUUU ugugguucuu  
 ||||||||                ||   |||||||| |||||||||| a
 gaggAUUC                GG   GUUGAGAG ACACuaagag  
g        ---------------A  UUG        -          c 

Annotation confidence Medium

Genome context

Chr3: 26014526-26014609 [+]

Mature lja-miR11082f-5p

• Accession: MIMAT0054632
• Description: Lotus japonicus lja-miR11082f-5p mature miRNA
• Sequence: 17 - AGUUUCCCACCUAUAGCUUUU - 37
• Evidence: experimental ; unknown

Mature lja-miR11082f-3p

• Accession: MIMAT0043740
• Description: Lotus japonicus lja-miR11082f-3p mature miRNA
• Sequence: 58 - CACAGAGAGUUGGUUGGACUUA - 79
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 25967282
   micro RNA 172 (miR172) signals epidermal infection and is expressed in cells primed for bacterial invasion in Lotus japonicus roots and nodules
   "Holt DB, Gupta V, Meyer D, Abel NB, Andersen SU, Stougaard J, Markmann K"
   "New Phytol (2015) 208:241-256