Stem-loop lja-MIR11082g

Accession

MI0035770

Description

Lotus japonicus lja-MIR11082g precursor miRNA

Sequence

15804 reads, 1517.0 reads per million, 9 experiments

ucauucgggacaggguaguuucccaccUAUAGCUUUUUGUGUGGUUUCguuacgggaauCACAGAGAGUUGGUUGGACUUAggaagucuugcuucaggccgaugg
.(((.(((....(((((((((((......(((((((((.(((((((((......))))))))).))))..)))))......))))).).)))))....)))))).

Structure

u   u   gaca     - -     caccUA     --    G         gu 
 cau cgg    gggua g uuucc      UAGCU  UUUU UGUGGUUUC  u
 ||| |||    ||||| | |||||      |||||  |||| |||||||||   
 gua gcc    uucgu c gaagg      GUUGG  GAGA ACACuaagg  a
g   -   ggac     u u     AUUCAG     UU    G         gc 

Annotation confidence Medium

Genome context

Chr4: 13958202-13958306 [+]

Mature lja-miR11082g-5p

• Accession: MIMAT0054633
• Description: Lotus japonicus lja-miR11082g-5p mature miRNA
• Sequence: 28 - UAUAGCUUUUUGUGUGGUUUC - 48
• Evidence: experimental ; unknown

Mature lja-miR11082g-3p

• Accession: MIMAT0043741
• Description: Lotus japonicus lja-miR11082g-3p mature miRNA
• Sequence: 60 - CACAGAGAGUUGGUUGGACUUA - 81
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 25967282
   micro RNA 172 (miR172) signals epidermal infection and is expressed in cells primed for bacterial invasion in Lotus japonicus roots and nodules
   "Holt DB, Gupta V, Meyer D, Abel NB, Andersen SU, Stougaard J, Markmann K"
   "New Phytol (2015) 208:241-256