Stem-loop lja-MIR11082h

Accession

MI0035771

Description

Lotus japonicus lja-MIR11082h precursor miRNA

Sequence

15481 reads, 1436.0 reads per million, 9 experiments

ucauuuguuucauucgggacaggguaguuucucaccUAUAGCUUUUUGUGUGGUUUCguuacgggaauCACAGAGAGUUGGUUGGACUUAggaagucuuguuucaggccgaugg
.((((.((((.....(((((((((...(((((..((..((((((((..(((((((((......)))))))))))))))))...))....))))).))))))))))))).)))).

Structure

u    u    cauuc         uag     --ca  -UA        UG         gu 
 cauu guuu     gggacaggg   uuucu    cc   UAGCUUUU  UGUGGUUUC  u
 |||| ||||     |||||||||   |||||    ||   ||||||||  |||||||||   
 guag cgga     cuuuguucu   aaggA    GG   GUUGAGAG  ACACuaagg  a
g    c    -----         --g     UUCA  UUG        --         gc 

Annotation confidence Low

Genome context

Chr5: 917016-917129 [+]

Mature lja-miR11082h-5p

• Accession: MIMAT0054634
• Description: Lotus japonicus lja-miR11082h-5p mature miRNA
• Sequence: 37 - UAUAGCUUUUUGUGUGGUUUC - 57
• Evidence: experimental ; unknown

Mature lja-miR11082h-3p

• Accession: MIMAT0043742
• Description: Lotus japonicus lja-miR11082h-3p mature miRNA
• Sequence: 69 - CACAGAGAGUUGGUUGGACUUA - 90
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 25967282
   micro RNA 172 (miR172) signals epidermal infection and is expressed in cells primed for bacterial invasion in Lotus japonicus roots and nodules
   "Holt DB, Gupta V, Meyer D, Abel NB, Andersen SU, Stougaard J, Markmann K"
   "New Phytol (2015) 208:241-256