Stem-loop lja-MIR11082i

Accession

MI0035772

Description

Lotus japonicus lja-MIR11082i precursor miRNA

Sequence

6354 reads, 632.0 reads per million, 9 experiments

gccUAUAGCUUUUUGUGUGGUUUCucuacgggaauCACAGAGAGUUGGUUGGACU
.((..((((((((..((((((((((....))))))))))))))))))...))...

Structure

--g  -UA        UG          c 
   cc   UAGCUUUU  UGUGGUUUCu u
   ||   ||||||||  ||||||||||  
   GG   GUUGAGAG  ACACuaaggg a
UCA  UUG        --          c 

Annotation confidence Low

Genome context

Chr2: 3086519-3086573 [+]

Mature lja-miR11082i-5p

• Accession: MIMAT0043743
• Description: Lotus japonicus lja-miR11082i-5p mature miRNA
• Sequence: 4 - UAUAGCUUUUUGUGUGGUUUC - 24
• Evidence: experimental ; Illumina [1]

Mature lja-miR11082i-3p

• Accession: MIMAT0043744
• Description: Lotus japonicus lja-miR11082i-3p mature miRNA
• Sequence: 36 - CACAGAGAGUUGGUUGGACU - 55
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 25967282
   micro RNA 172 (miR172) signals epidermal infection and is expressed in cells primed for bacterial invasion in Lotus japonicus roots and nodules
   "Holt DB, Gupta V, Meyer D, Abel NB, Andersen SU, Stougaard J, Markmann K"
   "New Phytol (2015) 208:241-256