Stem-loop lja-MIR11082k

Accession

MI0035774

Description

Lotus japonicus lja-MIR11082k precursor miRNA

Sequence

8956 reads, 830.0 reads per million, 9 experiments

accUAUAGCUUUUUGUGUGGUUUCguuacgggaauCACAGAGAGUUGGUUGGACU
.((..((((((((..(((((((((......)))))))))))))))))...))...

Structure

--a  -UA        UG         gu 
   cc   UAGCUUUU  UGUGGUUUC  u
   ||   ||||||||  |||||||||   
   GG   GUUGAGAG  ACACuaagg  a
UCA  UUG        --         gc 

Annotation confidence Low

Genome context

Chr0: 3762356-3762410 [+]

Mature lja-miR11082k-5p

• Accession: MIMAT0054635
• Description: Lotus japonicus lja-miR11082k-5p mature miRNA
• Sequence: 4 - UAUAGCUUUUUGUGUGGUUUC - 24
• Evidence: experimental ; unknown

Mature lja-miR11082k-3p

• Accession: MIMAT0043746
• Description: Lotus japonicus lja-miR11082k-3p mature miRNA
• Sequence: 36 - CACAGAGAGUUGGUUGGACU - 55
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 25967282
   micro RNA 172 (miR172) signals epidermal infection and is expressed in cells primed for bacterial invasion in Lotus japonicus roots and nodules
   "Holt DB, Gupta V, Meyer D, Abel NB, Andersen SU, Stougaard J, Markmann K"
   "New Phytol (2015) 208:241-256