Stem-loop lja-MIR11083a

Accession

MI0035775

Description

Lotus japonicus lja-MIR11083a precursor miRNA

Sequence

2287 reads, 333.0 reads per million, 9 experiments

uugCUAGUUGGGUUGCUUAAAauuaugucgguggguccagacugacACAUAGGAUUUAAGCAACUCAagcaa
.((((...(((((((((((((.((((((((((........)))))))..)))..))))))))))))))))).

Structure

u    AGU             -a   --       ggg 
 ugCU   UGGGUUGCUUAAA  uua  ugucggu   u
 ||||   |||||||||||||  |||  |||||||    
 acga   ACUCAACGAAUUU  GAU  Acaguca   c
a    ---             AG   AC       gac 

Annotation confidence Low

Genome context

Chr1: 34537758-34537829 [+]

Mature lja-miR11083a-5p

• Accession: MIMAT0054636
• Description: Lotus japonicus lja-miR11083a-5p mature miRNA
• Sequence: 4 - CUAGUUGGGUUGCUUAAA - 21
• Evidence: experimental ; unknown

Mature lja-miR11083a-3p

• Accession: MIMAT0043747
• Description: Lotus japonicus lja-miR11083a-3p mature miRNA
• Sequence: 47 - ACAUAGGAUUUAAGCAACUCA - 67
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 25967282
   micro RNA 172 (miR172) signals epidermal infection and is expressed in cells primed for bacterial invasion in Lotus japonicus roots and nodules
   "Holt DB, Gupta V, Meyer D, Abel NB, Andersen SU, Stougaard J, Markmann K"
   "New Phytol (2015) 208:241-256