Stem-loop lja-MIR11083b

Accession

MI0035776

Description

Lotus japonicus lja-MIR11083b precursor miRNA

Sequence

3643 reads, 440.0 reads per million, 9 experiments

ugcaugguugcuuguuggguugcuuaaaugcuauucuggUGGGCCCAGACUGCCACAUAGGAUUUAAGCAACUCAUAAGCaacucaugua
(((((((((((((((.(((((((((((((.((((..((((((.......)))))).)))).)))))))))))))))))))))).))))))

Structure

      -         u             g    uc      GC 
ugcaug guugcuugu ggguugcuuaaau cuau  uggUGG  C
|||||| ||||||||| ||||||||||||| ||||  ||||||  C
auguac caaCGAAUA CUCAACGAAUUUA GAUA  ACCGUC  A
      u         -             G    -C      AG 

Annotation confidence Low

Genome context

Chr2: 8130902-8130991 [+]

Mature lja-miR11083b-5p

• Accession: MIMAT0054637
• Description: Lotus japonicus lja-miR11083b-5p mature miRNA
• Sequence: 40 - UGGGCCCAGACUGCCACAUAGGAU - 63
• Evidence: experimental ; unknown

Mature lja-miR11083b-3p

• Accession: MIMAT0043748
• Description: Lotus japonicus lja-miR11083b-3p mature miRNA
• Sequence: 57 - AUAGGAUUUAAGCAACUCAUAAGC - 80
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 25967282
   micro RNA 172 (miR172) signals epidermal infection and is expressed in cells primed for bacterial invasion in Lotus japonicus roots and nodules
   "Holt DB, Gupta V, Meyer D, Abel NB, Andersen SU, Stougaard J, Markmann K"
   "New Phytol (2015) 208:241-256