Stem-loop lja-MIR11083c

Accession

MI0035777

Description

Lotus japonicus lja-MIR11083c precursor miRNA

Sequence

3141 reads, 442.0 reads per million, 9 experiments

guugCUAGUUGGGUUGCUUAAAuacuauucugguggacccagacugccacAUAGGAUUUAAGCAACUCAUAAGCaac
((((((...(((((((((((((..((((..((((((.......)))))).))))..)))))))))))))..))))))

Structure

      AGU             ua    uc      ac 
guugCU   UGGGUUGCUUAAA  cuau  uggugg  c
||||||   |||||||||||||  ||||  ||||||  c
caaCGA   ACUCAACGAAUUU  GAUA  accguc  a
      -AU             AG    -c      ag 

Annotation confidence Low

Genome context

Chr3: 3067684-3067760 [-]

Mature lja-miR11083c-5p

• Accession: MIMAT0043749
• Description: Lotus japonicus lja-miR11083c-5p mature miRNA
• Sequence: 5 - CUAGUUGGGUUGCUUAAA - 22
• Evidence: experimental ; Illumina [1]

Mature lja-miR11083c-3p

• Accession: MIMAT0043750
• Description: Lotus japonicus lja-miR11083c-3p mature miRNA
• Sequence: 51 - AUAGGAUUUAAGCAACUCAUAAGC - 74
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 25967282
   micro RNA 172 (miR172) signals epidermal infection and is expressed in cells primed for bacterial invasion in Lotus japonicus roots and nodules
   "Holt DB, Gupta V, Meyer D, Abel NB, Andersen SU, Stougaard J, Markmann K"
   "New Phytol (2015) 208:241-256