Stem-loop lja-MIR11078e

Accession

MI0035778

Description

Lotus japonicus lja-MIR11078e precursor miRNA

Sequence

9650 reads, 879.0 reads per million, 9 experiments

uuuUUUUACACCGUCAACCAAUCAaauuuuaaagaugugagaaaauuucucauuuuauuuaauuucauuaauugacguggcacAUCCUUGAAAUCUGAUUGGUUacgguguaaaaaaa
.(((((((((((((.(((((((((.(((((((.((((((..........((((.(((.(((((...))))).))).)))))))))).))))))).)))))))))))))))))))))).

Structure

u             C         a       a      agaaaauuuc    u   u     u 
 uuUUUUACACCGU AACCAAUCA auuuuaa gaugug          ucau uua uuaau  
 ||||||||||||| ||||||||| ||||||| ||||||          |||| ||| ||||| u
 aaaaaauguggca UUGGUUAGU UAAAGUU CUAcac          ggug agu aauua  
a             -         C       C      ----------    c   u     c 

Annotation confidence Low

Genome context

Chr4: 30290220-30290337 [+]

Mature lja-miR11078e-5p

• Accession: MIMAT0054638
• Description: Lotus japonicus lja-miR11078e-5p mature miRNA
• Sequence: 4 - UUUUACACCGUCAACCAAUCA - 24
• Evidence: experimental ; unknown

Mature lja-miR11078e-3p

• Accession: MIMAT0043751
• Description: Lotus japonicus lja-miR11078e-3p mature miRNA
• Sequence: 84 - AUCCUUGAAAUCUGAUUGGUU - 104
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 25967282
   micro RNA 172 (miR172) signals epidermal infection and is expressed in cells primed for bacterial invasion in Lotus japonicus roots and nodules
   "Holt DB, Gupta V, Meyer D, Abel NB, Andersen SU, Stougaard J, Markmann K"
   "New Phytol (2015) 208:241-256