Stem-loop lja-MIR11072b

Accession

MI0035779

Description

Lotus japonicus lja-MIR11072b precursor miRNA

Sequence

26121 reads, 2419.0 reads per million, 9 experiments

uaaUUGGUCCCUGUGGUUGUGUggccgacugaaauuagucccucccguaaaaucuaaguccucguguuuggaaaguguguggaaauuagucccuccggcgaggaccugcuacacacacuuuuucaaacacgaggacuuagauuuuacgggagggacuaauuucagacagccACACAACCACAGGGACCAAuua
(((((((((((((((((((((((((.(.(((((((((((((((((((((((((((((((((((((((((((((((((((((.....(((..((((....))))..)))...))))))).)))))))))))))))))))))))))))))))))))))))))))))).).)))))))))))))))))))))))))

Structure

                         c a                                              -       gaaau   uc    c 
uaaUUGGUCCCUGUGGUUGUGUggc g cugaaauuagucccucccguaaaaucuaaguccucguguuuggaaa gugugug     uag  ccuc g
||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||| |||||||     |||  ||||  
auuAACCAGGGACACCAACACAccg c gacuuuaaucagggagggcauuuuagauucaggagcacaaacuuuu cacacac     guc  ggag g
                         a a                                              u       --auc   ca    c 

Annotation confidence Medium

Genome context

Chr2: 38582678-38582870 [-]

Mature lja-miR11072b-5p

• Accession: MIMAT0043752
• Description: Lotus japonicus lja-miR11072b-5p mature miRNA
• Sequence: 4 - UUGGUCCCUGUGGUUGUGU - 22
• Evidence: experimental ; Illumina [1]

Mature lja-miR11072b-3p

• Accession: MIMAT0043753
• Description: Lotus japonicus lja-miR11072b-3p mature miRNA
• Sequence: 172 - ACACAACCACAGGGACCAA - 190
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 25967282
   micro RNA 172 (miR172) signals epidermal infection and is expressed in cells primed for bacterial invasion in Lotus japonicus roots and nodules
   "Holt DB, Gupta V, Meyer D, Abel NB, Andersen SU, Stougaard J, Markmann K"
   "New Phytol (2015) 208:241-256